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In-situ measurement columns the raw export carries

Source: R/raw_data.R
measurement_columns.Rd

A formatted database has had the units cut off its taxon columns, so nothing in a name distinguishes CALANUS_FINMARCHICUS from BTM_TEMP. These are the measurement columns the ECOMON export is known to carry, so that a list of modellable species is not padded with water temperature.

Usage

measurement_columns()

Value

character vector of column names

Details

A list rather than a rule, because there is no rule: the export names its measurements no differently from its animals. Anything not here and not structural is taken to be a taxon.

SFC_TMEP is in the list twice over, spelled as the export spells it and as it would be spelled correctly, so a file that has since been fixed is still handled.

Examples

measurement_columns()
#>  [1] "CRUISE_NAME"    "EVENT_PK_SEQ"   "NET_PK_SEQ"     "ZOO_GEAR"      
#>  [5] "TOW_PROTOCOL"   "TOW_PROFILE"    "SORT_TYPE"      "STATION_DEPTH" 
#>  [9] "SFC_TMEP"       "SFC_TEMP"       "SFC_SALT"       "BTM_TEMP"      
#> [13] "BTM_SALT"       "BIO_VOLUME_1M2"